News items pertaining to the TM4 Microarray Software Suite. en-us http://www.tm4.org/ http://www.tm4.org/mini-banner.gif http://www.tm4.org 88 31 MeV v4.1.01 is now available for download. This is a bugfix release that addresses mainly problems with the Mac and Linux versions of MeV v4.1. http://mev.tm4.org/ MeV v4.1 is now available for download. This new release includes a new annotation model, a ChARM implementation and a new NonpaR module containing statistical tools. http://mev.tm4.org/ http://www.tm4.org/utilities.html MeV v4.0 has come out of beta testing. A few bugs were found and fixed, including a bug that prevented state-saving on the Mac and Linux platforms. See the release notes for details. http://mev.tm4.org/ MeV v4.0b is now available for download. New features include MeV v4.0b is now available for download. New features include Robust Analysis of MicroArrays (RAMA), Comparative Genomic Hybridization Viewer & Analyzer, Linear Expression Mapping (LEM), Tree-EASE (TEASE), Bayesian Robust Inference for Differential Gene Expression (BRIDGE), Uncorrelated Shrunken Centroids (USC) and many smaller improvements and bux-fixes. See the release notes for details. http://mev.tm4.org/ MeSHer is a Java tool for biological literature mining. The program performs a statistical analyis of MeSH (Medical Subject Headings) terms to find over-represented biological themes in a given sample of genes as compared with a larger population of genes. http://www.tm4.org/index.html#02/25/05 MADAM is now available for the Linux platform. Version 4.1 has just been released, complete with an installation script. http://www.tm4.org/index.html#02/09/05 ExpressConverter has just been updated to version 1.7. You can download it from the utilities page. Check out the release notes for information about the updates. http://www.tm4.org/index.html#01/27/05 Now you can subscribe to our RSS feed and keep up-to-date with ongoing work on TM4. http://www.tm4.org/index.html#01/13/05 The Automated Microarray Pipeline is a series of programs that allow the automated normalization and web publication of microarray data. Data stored in a MADAM-compliant database, like that provided with MADAM, can be automatically downloaded, normalized and uploaded into another web-optimized database. The web application portion of the pipeline can then be used to access this processed data through a standard web browser. http://www.tm4.org/index.html#12/30/04 Feature article of the November 18th issue of the Canadian Bioinformatics Helpdesk Newsletter (http://gchelpdesk.ualberta.ca/news/news.php) contributed by Jean-Philippe Laverdure (jean-philippe.laverdure@bioneq.qc.ca), Trainer, Quebec Bioinformatics Network (BioneQ: http://bioneq.qc.ca/). http://gchelpdesk.ualberta.ca/news/18nov04/cbhd_news_18nov04.php http://www.tm4.org/index.html#11/30/04